Research & Projects

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Research & Projects

2024-10 - PRESENT

Single-cell sample-level embedding

single-cell-omics , method-development

Sample-level embedding of scRNA-seq data to enable direct comparison between clinical samples and cohorts

representation learning scRNA-seq method development statistical simulation +1

2026-03 - 2026-03

Research Workflow Automation System

ML/DL , Automation

A 9-stage automated research pipeline with resumable execution, Python-based validation, and intelligent token management for academic research workflows.

Python Automation LLM Research Workflow

2025-12 - 2025-12

Global Breast Cancer Clinical Trial Visualization

dashboard

An interactive data visualization tool analyzing over 16,000 global breast cancer clinical trials to identify historical trends, geographic gaps, and sponsorship impact on research outcomes.

Data Processing Pandas Altair Dashboard design

2025-09 - 2025-12

Menufesto: Agentic RAG Dish Translator

ml-dl

An AI-first menu translator combining OCR, agentic RAG, and reflection modules for cultural grounding.

RAG LLM Agents Docker LangChain

2025-05 - 2025-08

Multimodal Deep Learning & Spatial Analysis in Ovarian Cancer

digital-pathology

End-to-end computational pathology pipeline: from automated WSI registration to patient-level molecular prediction using foundation models.

Weakly Supervised Learning Image Registration Python Package OpenCV +1

2025-05 - 2025-08

Multi-omics R Shiny Dashboard

dashboard

Interactive visualization platform merging transcriptomic data with pathology metrics for oncology research.

R Shiny Multi-omics Dashboard Design

2025-01 - 2025-05

Toxic Comment Detection

ml-dl

Fine-tuning and benchmarking transformer models for large-scale social media moderation.

BERT DeBERTa Tensorflow

2024-10 - 2024-12

Spatial Characterization of Cell Type Proximity in the Developing Mouse Brain

single-cell-omics , method-development

Quantifying how maternal immune activation reshapes cell cell organization in the developing brain using MERFISH spatial transcriptomics and negative binomial modeling.

spatial transcriptomcis regression analysis neuroscience

2023-03 - 2024-05

Antimicrobial Peptide Generator

ml-dl

Deep generative model for antimicrobial peptide sequence generation using RL and GANs.

Reinforcement Learning Generative Adverserial Network Deep Learning PyTorch

2023-06 - 2023-09

PDAC Spatial Transcriptomics Analysis

single-cell-omics

Investigating perineural invasion in pancreatic ductal adenocarcinoma using spatial deconvolution.

scRNA-seq spatial transcriptomics Python R

2023-05 - 2023-08

Prognostic Marker Discovery Pipeline

single-cell-omics

Automated pipeline for harmonizing large-scale public scRNA-seq datasets to identify clinical markers.

Python Metadata Harmonization Survival Analysis

2022-03 - 2023-08

Deep Forest for Antitubercular Peptides

ml-dl

Predicting antitubercular activity using deep forest architecture and graphical feature representation.

Deep Forest Feature Engineering Drug Discovery tensorflow