ScRNA-Seq

CAPE: Covariance Alignment for Population Embedding in Single-cell Studies

Overview CAPE is a sample-level embedding framework for single-cell cohort studies. It compares whole samples by aligning the covariance structures of their gene expression matrices. It does not require cell-type annotations or precomputed cell embeddings.

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PDAC Spatial Transcriptomics Analysis

Overview Analyzed the intersection of nerves and tumor cells in Pancreatic Ductal Adenocarcinoma (PDAC) to understand how the microenvironment facilitates perineural invasion.

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